Indexed Sequencing Overview Guide (15057455)
TUFTS - TUCF Genomics
The MGH NextGen Sequencing Core | Core Services
Sequencing Knowledge Base – CZ Biohub at Stanford
Trimming adapter sequences - is it necessary?
xGen NGS Adapters & Indexing Primers | IDT
Handling of targeted amplicon sequencing data focusing on index hopping and demultiplexing using a nested metabarcoding approach in ecology | Scientific Reports
The MGH NextGen Sequencing Core | Core Services
QIAGEN Bioinformatics Manuals
Tomato Epigenome Database
Biotech7005 | The practical material from the course Biotech 7005: Bioinformatics and Systems Modelling
LUMI-PCR: an Illumina platform ligation-mediated PCR protocol for integration site cloning, provides molecular quantitation of integration sites | Mobile DNA | Full Text
Illumina Sequencing (for Dummies) -An overview on how our samples are sequenced. – kscbioinformatics
Biomolecules | Free Full-Text | High-Throughput Identification of Adapters in Single-Read Sequencing Data
phylogenetics - Why do NEBNext indexing primers have sequence between the p5 oligo and index? - Bioinformatics Stack Exchange
16S rRNA primer designs and amplification strategies | IDT
Illumina Genome Analyzer sequencing. Adapter-modified, single-stranded... | Download Scientific Diagram
Supplementary Methods
Trimming adapter sequences - is it necessary?
![Adapterama II: universal amplicon sequencing on Illumina platforms (TaggiMatrix) [PeerJ]](https://dfzljdn9uc3pi.cloudfront.net/2019/7786/1/fig-1-full.png "Adapterama II: universal amplicon sequencing on Illumina platforms (TaggiMatrix) [PeerJ]")
Adapterama II: universal amplicon sequencing on Illumina platforms (TaggiMatrix) [PeerJ]
How short inserts affect sequencing performance
What is index hopping? - The Sequencing Center
The MGH NextGen Sequencing Core | Core Services
TUFTS - TUCF Genomics
Reference genome-independent assessment of mutation density using restriction enzyme-phased sequencing | BMC Genomics | Full Text
